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Biostars

News: The Biostar Handbook. ... goseq tutorial I learn that I can also use count data instead to of length data, But not su. ... Powered by Biostar version 2.3.0.

Tutorials - Biostars

https://www.biostars.org/u/49169/. C: file and directory management best practices by Kamil • 2.0k. This seems like a very clever and flexible way to keep notes.

GDC server down??? - Biostars

Not sure what URL TCGAbiolinks uses but the GDC portal is very much ... in value[[3L]](cond) : GDC server down, try to use this package later.

Why Should I Use Galaxy - Biostars

But not all groups will have this need -- we happen to have this need. ... it prevents a naive user from tearing down a machine/cluster, so you ...

Can't access DAVID - Biostars

FYI, you can also test yourself here: down for everyone or just me ... Here is their email address since you can't connect to their site! [email protected].

Is biomaRt service down? - Biostars

Help would still be appreciated! biomart R • 3.7k views. ADD COMMENT • link •. Not following.

Enrichment heatmap - GOstats package of R - Biostars

I started by using hyperGTest of package GOstats to calculate p-value for different GO terms. ... 1 cause wanted to get p-values for all terms, even those that were not significant. ... C: Gene ontology comparsion between up- and down-regulated genes ... I'm trying to run a hyperGTest from GOstats (bioconductor) package on ...

Gene Ontology without enrichment analysis - Biostars

http://gostat.wehi.edu.au/cgi-bin/goStat.pl ... If you download the GO results, you'll see not only how many genes but also a list of every gene ...

Separate enrichment analysis of pathways for up- and ... - Biostars

It does not separate up and down regulated genes of different categories and perform the analysis of each contrast. 2. Also, by performing the ...

Is the Ensembl.org website down today 11/3/2018 - Biostars

Question: Is the Ensembl.org website down today 11/3/2018. 0 ... Main Ensembl sites is NOT down. ... I am not sure what is going on locally (US east coast).

Is There A List Of Public Galaxy Servers? - Biostars

Galaxy Main - Currently down. Biomedical research ... Not stable or persistent. Storage and ... http://www.genboree.org/galaxy/. Genboree

cuffdiff splicing.diff 'notest' - interpretation? - Biostars

80-90% of the gene IDs have the status 'notest'. I consulted the manual ... which states that this means 'not enough alignments for testing'. Now I could be naive ...

Survival analysis of TCGA patients integrating gene ... - Biostars

​go to FireBrowse ( http://gdac.broadinstitute.org/ ), select "Kidney renal clear ... created the death event vector based on the vital status from the clinical data.

Problem With Picard Dedup In Illumina Alignment Pipeline - Biostars

I ran into a bin field problem when I used Picard's MarkDuplicates before, and tried to find documentation for the error either in Picard's source ...

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