I started by using hyperGTest of package GOstats to calculate p-value for different GO terms. ... 1 cause wanted to get p-values for all terms, even those that were not significant. ... C: Gene ontology comparsion between up- and down-regulated genes ... I'm trying to run a hyperGTest from GOstats (bioconductor) package on ...
It does not separate up and down regulated genes of different categories and perform the analysis of each contrast. 2. Also, by performing the ...
http://gostat.wehi.edu.au/cgi-bin/goStat.pl ... If you download the GO results, you'll see not only how many genes but also a list of every gene ...
14 Apr 2017 ... The functions or variables listed here are no longer part of GOstats as they ... children down to the root node for the ontology. ... Given the result of a hyperGTest run (an instance of GOHyperGResult), this function lists all Probe.
23 Aug 2006 ... The functions or variables listed here are no longer part of GOstats as they ... children down to the root node for the ontology. ... Given the result of a hyperGTest run (an instance of GOHyperGResult), this function lists all Probe.
... built some cool stuff with heatmap.js or have questions pls let me know! (contact form @patrick-wied.at) Scroll down or click if you want to know how to use it.
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News: The Biostar Handbook. ... goseq tutorial I learn that I can also use count data instead to of length data, But not su. ... Powered by Biostar version 2.3.0.
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https://www.biostars.org/u/49169/. C: file and directory management best practices by Kamil • 2.0k. This seems like a very clever and flexible way to keep notes.
Not sure what URL TCGAbiolinks uses but the GDC portal is very much ... in value[[3L]](cond) : GDC server down, try to use this package later.
But not all groups will have this need -- we happen to have this need. ... it prevents a naive user from tearing down a machine/cluster, so you ...
17 Mar 2009 ... Hi Sebastien, The source of your confusion on this is the fact that not every gene ... After GOstats gets finished paring down the gene universe it ...
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Help would still be appreciated! biomart R • 3.7k views. ADD COMMENT • link •. Not following.
FYI, you can also test yourself here: down for everyone or just me ... Here is their email address since you can't connect to their site! [email protected].
... or 2 node graphs (unless they are relevant). It is not clear, how you known if it is relevant this node or not, and should probably be another separate question.
19 Apr 2020 ... The R package GOstats 48 was not certified by peer review) is the ... The GOslim of the plant-specific condensed version of the GO was run for ...
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Question: Is the Ensembl.org website down today 11/3/2018. 0 ... Main Ensembl sites is NOT down. ... I am not sure what is going on locally (US east coast).
Galaxy Main - Currently down. Biomedical research ... Not stable or persistent. Storage and ... http://www.genboree.org/galaxy/. Genboree
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80-90% of the gene IDs have the status 'notest'. I consulted the manual ... which states that this means 'not enough alignments for testing'. Now I could be naive ...
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The radius each datapoint will have (if not specified on the datapoint itself); opacity (number) [0,1] *optional* default = .6. A global opacity for the whole heatmap.
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Up vote 4 Down vote Accepted. Loading when this answer was accepted… Try taking a look at this heatmap.js by Patrick Wied. Be sure to click ...
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