Genome-wide discovery of structured noncoding RNAs in bacteria ...

Genome-wide discovery of structured noncoding RNAs in bacteria ...

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Genome-wide discovery of structured noncoding RNAs in bacteria ...

22 Mar 2019 ... Genome-wide discovery of structured noncoding RNAs in bacteria ... No changes in the plot occurred outside of the area depicted. ... For agar-diffusion assays, cells grown in LB were spun down and washed with GMM to ...

Genome‐wide Discovery of Rare Riboswitches in Bacteria ...

1 Apr 2019 ... Genome‐wide Discovery of Rare Riboswitches in Bacteria ... undergoes a conformational change from an 'on' state to an 'off' state ... There is no full text article associated with this abstract published in The FASEB Journal.

Genome-wide analysis of brassinosteroid responsive small RNAs in ...

9 Jul 2020 ... ... National University, Daejeon, 34134, Korea. [email protected]. ... miR398a-5p is down-regulated by BRs, its predicted targets were not ...

Transcriptome-wide discovery of coding and noncoding RNA ...

10 Apr 2018 ... In HeLa cells, CARIC identified 597 RBPs, including 130 proteins not ... identification of RBPs with no need for oligo(dT) pull-down (35, 36).

PAREsnip: a tool for rapid genome-wide discovery of small RNA ...

28 Mar 2012 ... If at any point a rule is broken during a traversal and there is no valid alignment in its maintained history, the algorithm no longer continues down ...

HGTector: an automated method facilitating genome-wide discovery ...

26 Aug 2014 ... However, this is not straightforward in practice and is especially difficult for ... result, the program option of excluding paralogs was turned off.

Genome-wide discovery of somatic regulatory variants in diffuse ...

1 Oct 2018 ... The function of MEF2B mutation in DLBCL has not been definitively established and these putative inactivating mutations provides further ...

Circular Intronic Long Noncoding RNAs - ScienceDirect

26 Sep 2013 ... This motif is not enriched in regular introns or other reported ... each ASO can efficiently knock down its targeted intronic sequence (Figure 4C), ...

Genome-wide analysis on the maize genome reveals weak ...

29 Apr 2020 ... The synonymous mutations in the maize genome are not strictly ... mutations have significantly higher DAF than the tAI-down mutations (Fig.

Genome-Wide cfDNA Test | MaterniT™ GENOME

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Computational discovery of hidden breaks in 28S ribosomal RNAs ...

20 Dec 2019 ... RNA Integrity Numbers (RIN) rely on intact 28S rRNA and will be consistently ... The processing of the hidden break does not occur in model ...

Isolation and genome-wide characterization of cellular DNA: RNA ...

3 Jan 2019 ... Although the ability of DNA to engage in triplex structures with RNA is well established ... of DNA:RNA triplexes by RNA pull-down and sequencing of associated DNA. ... RNA from DNA-IP was not subjected to rDNA depletion. ... D.K.. ,. Roeder. R.G.. Separation and partial characterization of three functional ...

(PDF) The EIL transcription factor family in soybean: Genome-wide ...

of EIL3, but not other EIL genes of Arabidopsis, ... and dicots than in other higher plants, and no EIL ... expression of GmEIL11 was down-regulated both in.

Genome-Wide Microarray Analysis Suggests Transcriptomic ...

13 Mar 2019 ... [email protected]. ... Of the 23,188 genes being analyzed, 47 (33 up-regulated and 14 down-regulated) were found to have differential ...

Affymetrix Genome-wide Human SNP Assay —BIO-PROTOCOL

Spin down the plate at 560 x g for 30 sec. Store the plate in a cooling chamber on ice for up to 60 min. If not proceeding directly to the next step, store the plate at ...

Genome-Wide Analysis of Glycoside Hydrolase Family 1 β ...

3 Apr 2019 ... ... Yunnan University, Kunming 650091, China. [email protected]. ... and maize, but not in Brassica species, which are important vegetable crops. ... and the examination of knocked down Arabidopsis plants strongly ...

Insights into malaria susceptibility using genome-wide data on ...

16 Dec 2019 ... Previously reported HLA associations do not replicate in these samples. ... a Regional hitplot showing evidence for association (log10 BFavg, y axis) across a 2.5 ... correlated effects (all off-diagonal entries of Ρ set to 0.9) ... Tournamille, C., Colin, Y., Cartron, J. P. & Le Van Kim, C. Disruption of a GATA motif ...

MITE Digger, an efficient and accurate algorithm for genome wide ...

7 Jun 2013 ... MITE Digger, an efficient and accurate algorithm for genome wide discovery of miniature inverted repeat transposable elements. Guojun Yang.

Single nucleotide polymorphism-based genome-wide linkage ...

General Hospital, Japan, 3Department of Dermatology, Graduate School of ... Mikako Ito - [email protected]; Toshiyuki Kano - [email protected]; Takeshi Aoki - [email protected]; ... ATOD is not fully understood, but atopy, which is charac- terized by ... JD: Down-regulation of the macrophage lineage through.

SavvyCNV: genome-wide CNV calling from off-target reads | bioRxiv

13 Jun 2019 ... This article is a preprint and has not been certified by peer review [what does this ... Benchmarking off-target CNV calling from targeted panel data. ... Handsaker, R.E., Van Doren, V., Berman, J.R., Genovese, G., Kashin, S., ...

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Genome-wide association of Yorkie with chromatin and chromatin ...

8 Feb 2013 ... Yki was pulled down by GST:GAF, but not by GST (Fig. ... Dalao), or Mediator subunits (Kto, MED23 or MED15) were downregulated by RNAi.

Characterization of Bacteria Isolation of Bacteria from Pinyon ...

... of Chiapas, Tuxtla Gutiérrez Chiapas, México; e-mail: [email protected]. ... medium with mineral salts, crude glycerol (up) and lactoserum (down) as carbon source. ... The LS strains were not capable to grow on crude glycerol.

Genome Browser User's Guide - UCSC Genome Browser

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Up-regulation of long noncoding RNA M26317 correlates with tumor ...

Electronic address: [email protected]. ... We found that 41 lncRNAs were up-regulated and 31 lncRNAs were down-regulated more than 2-fold in ... (P < .05), but was not associated with sex, location of tumor, and differentiation (P > .05).

Long Noncoding RNA SChLAP1 Forms a Growth-Promoting ...

15 Nov 2019 ... [email protected] [email protected] [email protected]. ... Proteins complexed with SChLAP1 were identified using RNA pull-down and mass ...

Long noncoding RNA GM12371 acts as a transcriptional regulator of ...

8 Oct 2018 ... To knock down GM12371, we used two different gapmeRs (B2 and B3) (SI ... Despite its being an immediate early gene, cFos RNA was not ...

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Long Noncoding RNA-EBIC Promotes Tumor Cell Invasion by ...

9 Jul 2014 ... The sequences of primers are not provided by the corporation. ... were not obviously affected by down-regulation of lncRNA-EBIC (data not shown). ... 81272213), http://www.nsfc.gov.cn/Portal0/default152.htm, and the Natural Science Foundation of Shanghai(13ZR1414300), http://www.stcsm.gov.cn.

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Pol III Promoters to Express Small RNAs: Delineation of ...

Transcription from the U6 promoter does not necessarily start from the 1 (G) ... the transcription initiation of shR1005-GG and shR1005-GGG started at multiple ... likely to increase off-target effects caused by undesired small RNA products.

Circular RNAs: Methodological challenges and perspectives in ...

11 Sep 2018 ... Not surprisingly, circular RNA dysregulation and participation in the ... as well as in bowel tissues, where it is down‐regulated in Hirschsprung ...

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Circulating Plasma Micro RNAs in Patients with Major Depressive ...

30 Sep 2016 ... Tel: 40-730656429, Fax: 40-256220484, [email protected] ... The lists of up-regulated (cut-off=2) and down-regulated miRs were imported into the ... that do not directly address the etiopathogenic determinants of MDD.

Microarray Expression Profile Analysis of Long Non-Coding RNAs in ...

15 Apr 2014 ... All the patients had not received preoperative chemoradiation after ... B, The number of up-regulated and down-regulated lncRNAs ... Fourth Military Medical University, Xi'an, Shan'xi (China) E-Mail [email protected].

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